Wow. We've been doing multiplexed proteomics for 15 or 20 years. We also have more than 1,000 different pieces of software. Despite this, there has been a shortage of open tools to dig into multiplexed data. IsobaricQuant to the rescue!
1) Freely available at this Github.
2) Has documentation page up with installations instructions for multiple operating systems.
3) Has smart and powerful QC filters
4) Runs MokaPot!
5) Gets you back to the original data so you can check, by eye, if there is real support for your observations!
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