FragPipe on High Performance Cluster -- here's how you do it!

 

I was somewhere a couple years ago and I had what felt like unlimited access to unlimited cores of data processing due to a lot of infrastructure on supercomputing (that wasn't being used a lot?)

My university meters supercomputer access and it's sort of expensive, so I don't want to spend time tinkering with the darned thing and burn through a bunch of cash I could be spending on trypsin.

What if someone went through all that headache and just provided all the instructions?!? 

What would you do with MSFragger on a high performance cluster? They processed 3,800 TIMSTOF files in 9 (nine) days!