Friday, February 25, 2022

TMTPro18-Plex method for Proteome Discoverer and exact masses!

 Got your TMT18-plex reagents in house? 


Need the methods? For ProteomeDiscoverer you can download this .XML here

If you are using PD 2.4 or older you might need to update your modifications folder from UniMod. In PD 2.1 and 2.2 which I keep because some cool free tools work in those and haven't been updated to the new ones, I haven't been able to directly import from Unimod. Instead I copy the XML and then import that. 

Need the exact masses for some other tool? I put them into Excel here

Just wanna copy them from some weird guy on the internet? 
126.127726
127.124761
127.131081
128.128116
128.134436
129.131471
129.13779
130.134825
130.141145
131.13818
131.1445
132.141535
132.147855
133.14489
133.15121
134.148245
134.154565
135.1516

When 134C/135N comes in I'll probably need to update MaxQuant, but I haven't done it yet.

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