There is a decent chance given the amazing amount of traffic on the MSFragger Google Groups channel that you've already tried IonQuant and may be actively interacting with the developers to make it better and faster and more powerful.
If not, you should check out this ultrafast label free quantification application which actually works out a metric for false discovery rates for match between runs. We're literally using it every day! It's how we process our daily quality assurance runs on TIMMYDuncan.
No comments:
Post a Comment