Okay! Multiple groups have been working on this problem simultaneously!
Again, though, the only problem with DIA-NN (and some of these other amazing tools) is that they output a bunch of sheets. We've got 10 good programs for taking MaxQuant sheets and making them into data people want. What if we do this with DIA-NN?
There have always been these nice R Tools that you upload your DIA-NN results into. But some of us hate R.
DIAgui runs the DIA-NN R package without you having to touch the nasty stuff yourself. AND it adds some smart new features and capabilities.
You don't get the visualization of the raw data that you do with MassDASH, but my recent experience is that just about exactly no one wants to looks at mass spectra anyway unless they absolutely have to and there is no other option!.
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