As a silver lining for this virus thing is that we've got lots of time to work on informatics pipelines! How much? What about enough to drop 2 new glycoproteomics workflows the same day?
The first is an extension of the ultra fast MSFragger workflow and the figure at the top does a great job of explaining what it is doing.
The second (and in no particular order, when I select multiple images, blogger inserts them however it feels like) -- appears to be a new addition into MetaMorpheus, called O-PAIR search!
I unabashedly love both of these software packages, but don't have the time to test them and write glowing things quite yet.
SugarQuant is more than a software package -- it's a new twist on just doing glycoproteomics in general. TMT labeling + SPS MS3 for glycoproteomics and it utilizes ALL THE DATA.