I'd like to offer a big thank you to these authors! The Trans Proteomic Pipeline is something I've always respected and read lots about, but have always been far too dumb to use for myself.
You know what I need? A friendly Graphical User Interface (GUI) and that's what WinProphet is.
BOOM -- Access to all sorts of tools you've probably heard about and you were probably smart enough to use it (I'm not) but you didn't have time to learn a new command line program thing with all the options you have for searching proteomics data.
You can skip all the reading and just get WinProphet here!
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