If you've been reading the blog for very long, you know that I'm a big fan of MSAmanda. I'm psyched to announce that the paper describing the algorithm is now available here via JPR. The Venn diagram above shows the power of MSAmanda vs Sequest and the top secret Mascot algorithm.
I'm not knocking Mascot, but I sure do prefer publishing on algorithms that we can refer to! Particularly when they are free and they get me better results.
New stuff from the paper? There is a stand-alone MSAmanda! And they did some searching vs. low res MS/MS spectra and MSAmanda did very well. So, not only for high res MS/MS now!
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