What if the reason that some of these PTMs aren't visible is that the modification neutralizes that peptide's ability to pick up a charge? Makes sense. A lot of the more awful PTMs do.
But what if you could make them visible by adding a boring ol' tandem mass tag? Bonus points for the introduction of an enzyme I didn't know about with an amazing name:
Stop, don't read this. Next line until someone is around and then read it really loud!
"HEY! Someone order me some ULTRA ARRRRRRGGGG-C!!!!!"
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