I was freaking out just a little late last night in lab. You ever get those 100GB warnings from MASSIVE and then the time limit goes by and you're like "false alarm, nothing changed?"
If you're over your FairUse limits with Thermo RAW files those files will disappear.
With Bruker .d file format you have embedded folders. Those folders stay, they just get emptied out. For real - it'll look like you still uploaded like 800 .d files and they're still there - but they...aren't....
As I was trying to figure out what I still had backups of -and what I didn't - none of my FTP links that worked before ABRF seemed to work now.
Right now you just need to add the -ftp into every address.
For example - Proteome Discoverer files I need to answer a reviewer's question were
ftp://massive.ucsd.edu/v06/MSV000093434/
And the webportal version thinks that's what they still are -
But they're actually at
ftp://massive-ftp.ucsd.edu/v06/MSV000093434/search/
That's probably all stuff that will be fixed at the end of the migration. You might need to update some reviewers if you told them they could find the stuff at the former, but it's now at the latter.
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