There are all sorts of thing out there now that can learn from millions (billions?) of MS/MS spectra and can take your sequence and predict how it will fragment.
Which one is best? Who knows? Maybe we should have an algorithm DEATH MATCH!
HOWEVER their analysis turns out this tables 1 and table 2 are ridiculously valuable.
They're summaries of immunopeptidomics datasets! Which is what they tested prediction capabilities against.
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