Monday, October 13, 2014

ProteoRed -- Automatically extract info to match journal standards

Every few years or so, a new set of standards pops up for how we should all be reporting our data.  These standards have to change due to the exponential growth of data file size and shifting priorities of what information we really find valuable.  Sometimes its hard to keep up.

ProteoRed is a new approach for outputting this data.  ProteoRed (icon in blue above...) can automatically reach into files set up in the HUPO Pride XML format and extract the MIAPE (Minimum Information About Proteomics Experiments) that some journals require.  Saves us a step and minimizes human error that can arise when transposing these data.

You can find ProteoRed here.

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