Shoutout to @ScientistSaba for helping me keep up with all the awesome stuff happening #HUPO2016 and still having time to tip me off to some cool papers like this one!!
The paper introduces this little program GlycoPep MassList.
The concept is simple AND powerful! Feed it your protein and it will generate you an inclusion list for the glycopeptides that could occur given your parameters.
They demonstrate that it works on their Orbitrap Velos Pro. You can use it for a purely targeted experiment or within a "gas phase enrichment" strategy (like the "include others" button on a Q Exactive)!
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