Anyway, a new to me tool for gene ontology is GOrilla, which appears to be hosted by the Weizmann institute. I know there are a lot of GO tools out there, but this one has a couple of nice features beyond its great name. The first is a customizable p value threshold for your gene enrichment analysis. The second is the easy control of your output format. You can simply checkmark the box to output your data in Excel format and/or you can export it directly into the Revigo visualization tool.
You can check out GOrilla here.
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