Just a quick note about something I learned while at BRIMS last week. A joint effort from the Research Institute of Molecular Pathology and other groups through the Austrain Academy of Sciences has set up a site devoted to new nodes for Proteome Discoverer. The aptly named site, PD-Nodes (www.pd-nodes.org) currently only has 2 new nodes, but promises further development. The first is an improved version of Phospho-RS, our favorite phospho-site localization software. The second is an MS2 Spectrum Processing Node for deconvolution of ions in MS2 spectra.
I've bookmarked this site and will check frequently to see what else pops up for us to use!