Proteome Discoverer 2.2 Videos!


A PD user has produced a short series of videos to help us all get going with Proteome Discoverer 2.2.

The videos don't seem to cover topics that haven't changed from PD 2.0 and PD 2.1 so I've added some links to old videos that fill in the blanks.

Setting up Proteome Discoverer 2.2 for first use: https://vimeo.com/216704831/dcdd4b7384

Adding FASTA files from Hard Drive (from my PD 2.0 videos): https://vimeo.com/115595009

How to configure your Mascot Server (from my PD 2.0 videos): https://vimeo.com/117042117

What is the SpectrumRC node and how do you use it?  https://vimeo.com/216737928/bfc09afe5f

Getting started with label free quan with Minora!  https://vimeo.com/216690621/95caaff85c

A more in-depth look at the precursor ion quantification nodes:  https://vimeo.com/216734570/3b3546c44b

Looking at the Minora results: https://vimeo.com/216699979/fe1ed3bb4c

Finding what is significantly different in your data with Volcano plots: https://vimeo.com/216695357/eb8f1bf7d3

Reporter ion quantification report output:  https://vimeo.com/216702197/292d44c572

Using Filters and setting default filters for PD 2.2:  https://vimeo.com/216718011/d4e05cbf40

Optimizing the MSF Files consensus node: https://vimeo.com/216722376/204a582cf0



2 comments:

  1. These videos are very helpful thanks for making them available. just to let you know the volcano plots link is dead.

    ReplyDelete
  2. We recently upgraded from PD 2.1 to PD 2.2 and now searches using MS Amanda fail consistently did you have any issues with this?

    ReplyDelete