tag:blogger.com,1999:blog-3693238014525650573.post1567265455262741757..comments2024-03-28T08:46:55.598-07:00Comments on News in Proteomics Research: Making publication ready annotated spectra with IPSA and PD (or any other tool)! Unknownnoreply@blogger.comBlogger1125tag:blogger.com,1999:blog-3693238014525650573.post-86966320325662036122020-01-24T05:50:31.002-08:002020-01-24T05:50:31.002-08:00Hi Ben,
your post missed the latest extension/clon...Hi Ben,<br />your post missed the latest extension/clone of IPSA. It was developed at a hackathon hosted by the EUBIC (https://eubic-ms.org/events/2020-developers-meeting/<br />) from 13th to 17th of January.<br /><br />The proposed idea was to allow the comparison of uploaded spectra to ProteomeTools or predicted spectra from Prosit. Within the workshop we extended it to also allow querying spectra by their USI.<br /><br /><br />The scoring mechanisms have to be validated (proteomics algorithm in Javascript are rare ;))but the plots look great.<br /><br />Please try it:<br />https://kusterlab.github.io/IPSA/PeptideAnnotator.html?usi=mzspec:PXD015890:20190213_Rucks_atm6.raw%20(F002091).mzid_20190213_Rucks_atm6.raw_(F002091).MGF:index:914:YLDGLTAER/2<br /><br />Tobiashttps://www.blogger.com/profile/08200956839533004154noreply@blogger.com