tag:blogger.com,1999:blog-3693238014525650573.post4143209184975120890..comments2024-03-28T08:46:55.598-07:00Comments on News in Proteomics Research: BoxFahrt (BoxCar-ish on a Fusion -- no hacking required!)Unknownnoreply@blogger.comBlogger4125tag:blogger.com,1999:blog-3693238014525650573.post-69557379991398149182018-05-18T06:45:56.847-07:002018-05-18T06:45:56.847-07:00Naive question here. I haven't read the Boxcar...Naive question here. I haven't read the Boxcar article yet (waiting on my print subscription), but have read through the supplemental materials. What you're trying on the Fusion is sounding suspiciously like a wiSIM acquisition. Or am I missing something?Anonymoushttps://www.blogger.com/profile/13866994858092347096noreply@blogger.comtag:blogger.com,1999:blog-3693238014525650573.post-70522457858747699352018-05-17T03:23:07.413-07:002018-05-17T03:23:07.413-07:00How do you search the data? Proteome Discoverer?How do you search the data? Proteome Discoverer?Anonhttps://www.blogger.com/profile/17181286112994009593noreply@blogger.comtag:blogger.com,1999:blog-3693238014525650573.post-64086006317512522872018-05-16T22:08:01.572-07:002018-05-16T22:08:01.572-07:00I created a request to add support for extracting ...I created a request to add support for extracting the multiplexed isolation window data to RawQuant (https://github.com/kevinkovalchik/RawQuant/issues/1). Should be easy to get this data out for all scans (all 10 windows!). Anonymoushttps://www.blogger.com/profile/00615323186043032713noreply@blogger.comtag:blogger.com,1999:blog-3693238014525650573.post-49714837190563098502018-05-16T21:29:48.220-07:002018-05-16T21:29:48.220-07:00FYI - you can specify individual isolation windows...FYI - you can specify individual isolation windows in the mass list in the Fusion software, so you can stagger your windows to focus on regions dense with peptide ions (as they do in the paper).Anonymoushttps://www.blogger.com/profile/00615323186043032713noreply@blogger.com